{ "_id": "6a2925da732311cd8759ea8e", "Package": "IBMPopSim", "Type": "Package", "Title": "Individual Based Model Population Simulation", "Version": "1.1.0", "Date": "2024-10-10", "Authors@R": "c(\nperson('Daphné', 'Giorgi', role = c('aut', 'cre'),\nemail = 'daphne.giorgi@sorbonne-universite.fr'),\nperson('Sarah', 'Kaakai', role = 'aut',\nemail = 'sarah.kaakai@univ-lemans.fr'),\nperson('Vincent', 'Lemaire', role = 'aut',\nemail = 'vincent.lemaire@sorbonne-universite.fr')\n)", "Maintainer": "Daphné Giorgi ", "Description": "Simulation of the random evolution of heterogeneous\npopulations using stochastic Individual-Based Models (IBMs)\n. The package enables users to\nsimulate population evolution, in which individuals are\ncharacterized by their age and some characteristics, and the\npopulation is modified by different types of events, including\nbirths/arrivals, death/exit events, or changes of\ncharacteristics. The frequency at which an event can occur to\nan individual can depend on their age and characteristics, but\nalso on the characteristics of other individuals\n(interactions). Such models have a wide range of applications.\nFor instance, IBMs can be used for simulating the evolution of\na heterogeneous insurance portfolio with selection or for\nvalidating mortality forecasts. This package overcomes the\nlimitations of time-consuming IBMs simulations by implementing\nnew efficient algorithms based on thinning methods, which are\ncompiled using the 'Rcpp' package while providing a\nuser-friendly interface.", "URL": "https://github.com/daphnegiorgi/IBMPopSim,\nhttps://daphnegiorgi.github.io/IBMPopSim/", "BugReports": "https://github.com/DaphneGiorgi/IBMPopSim/issues", "License": "MIT + file LICENSE", "LazyData": "true", "NeedsCompilation": "yes", "VignetteBuilder": "knitr", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.2", "Encoding": "UTF-8", "Config/pak/sysreqs": "libx11-dev", "Repository": "https://daphnegiorgi.r-universe.dev", "Date/Publication": "2025-05-16 13:04:03 UTC", "RemoteUrl": "https://github.com/daphnegiorgi/ibmpopsim", "RemoteRef": "HEAD", "RemoteSha": "d10b9c642ee090cc62405fd7eb4d0ba0fd3442b1", "Packaged": { "Date": "2026-06-10 08:15:32 UTC", "User": "root" }, "Author": "Daphné Giorgi [aut, cre],\nSarah Kaakai [aut],\nVincent Lemaire 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"print.model", "print.population", "pyramid", "stepfun", "summary.event", "summary.logs", "summary.model", "summary.population", "summary.simulation_output", "weibull" ], "_datasets": [ { "name": "EW_pop_14", "title": "England and Wales (EW) 2014 population, death and birth rates.", "object": "EW_pop_14", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "EW_pop_out", "title": "Example of \"human population\" after 100 years of simulation.", "object": "EW_pop_out", "class": [ "data.frame" ], "fields": [ "birth", "death", "male" ], "rows": 35555, "table": true, "tojson": true }, { "name": "EW_popIMD_14", "title": "England and Wales (EW) 2014 population and death rates by Index of Multiple Deprivation (IMD).", "object": "EW_popIMD_14", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "EWdata_hmd", "title": "England and Wale mortality data (source: Human Mortality Database)", "object": "EWdata_hmd", "class": [ "demogdata" ], "fields": [], "table": false, "tojson": false }, { "name": "toy_params", "title": "Toy parameters for IBMPopSim-human_popIMD vignette example.", "object": "toy_params", "class": [ "list" ], "fields": [], "table": false, "tojson": true } ], "_help": [ { "page": "IBMPopSim-package", "title": "IBMPopSim: Individual Based Model Population Simulation", "topics": [ "IBMPopSim-package", "IBMPopSim" ] }, { "page": "add_characteristic", "title": "Generic method for add_characteristic", "topics": [ "add_characteristic" ] }, { "page": "add_characteristic.population", "title": "Add characteristic to a population", "topics": [ "add_characteristic.population" ] }, { "page": "age_pyramid", "title": "Generic method for age_pyramid", "topics": [ "age_pyramid" ] }, { "page": "age_pyramid.population", "title": "Age pyramid from a population at a given time.", "topics": [ "age_pyramid.population" ] }, { "page": "age_pyramids", "title": "Generic method for age_pyramids", "topics": [ "age_pyramids" ] }, { "page": "age_pyramids.population", "title": "Age pyramid from a population data frame at some given times.", "topics": [ "age_pyramids.population" ] }, { "page": "check_intensity_code", "title": "Check the intensity code.", "topics": [ "check_intensity_code" ] }, { "page": "check_interaction_code", "title": "Check the interaction code.", "topics": [ "check_interaction_code" ] }, { "page": "check_kernel_code", "title": "Check the kernel code.", "topics": [ "check_kernel_code" ] }, { "page": "compatibility_chars_events", "title": "Check characteristics-events compatibility", "topics": [ "compatibility_chars_events" ] }, { "page": "compatibility_pop_model", "title": "Check population-model compatibility", "topics": [ "compatibility_pop_model" ] }, { "page": "death_table", "title": "Death table", "topics": [ "death_table" ] }, { "page": "EW_pop_14", "title": "England and Wales (EW) 2014 population, death and birth rates.", "topics": [ "EW_pop_14" ] }, { "page": "EW_pop_out", "title": "Example of \"human population\" after 100 years of simulation.", "topics": [ "EW_pop_out" ] }, { "page": "EW_popIMD_14", "title": "England and Wales (EW) 2014 population and death rates by Index of Multiple Deprivation (IMD).", "topics": [ "EW_popIMD_14" ] }, { "page": "EWdata_hmd", "title": "England and Wale mortality data (source: Human Mortality Database)", "topics": [ "EWdata_hmd" ] }, { "page": "exposure_table", "title": "Exposure table", "topics": [ "exposure_table" ] }, { "page": "get_characteristics", "title": "Generic method for get_characteristics", "topics": [ "get_characteristics" ] }, { "page": "get_characteristics.population", "title": "Returns names and C types of the characteristics.", "topics": [ "get_characteristics.population" ] }, { "page": "gompertz", "title": "Gompertz–Makeham intensity function.", "topics": [ "gompertz" ] }, { "page": "linfun", "title": "Linear interpolation function.", "topics": [ "linfun" ] }, { "page": "max.stepfun", "title": "Returns the maximum of a function of class 'stepfun'.", "topics": [ "max.stepfun" ] }, { "page": "merge_pop_withid", "title": "A function returning a merged dataframe from a list of population dataframes with id.", "topics": [ "merge_pop_withid" ] }, { "page": "mk_event_individual", "title": "Creating an event with intensity of class individual", "topics": [ "mk_event_individual" ] }, { "page": "mk_event_inhomogeneous_poisson", "title": "Creating inhomogeneous Poisson class event", "topics": [ "mk_event_inhomogeneous_poisson" ] }, { "page": "mk_event_interaction", "title": "Creating an event with intensity of type interaction", "topics": [ "mk_event_interaction" ] }, { "page": "mk_event_poisson", "title": "Creating Poisson class event", "topics": [ "mk_event_poisson" ] }, { "page": "mk_model", "title": "Creates a model for IBMPopSim.", "topics": [ "mk_model" ] }, { "page": "piecewise_x", "title": "Piecewise real function.", "topics": [ "piecewise_x" ] }, { "page": "piecewise_xy", "title": "Piecewise real function of two variables.", "topics": [ "piecewise_xy" ] }, { "page": "plot.population", "title": "Plot the age pyramid of a population data frame (at a given time).", "topics": [ "plot.population" ] }, { "page": "plot.pyramid", "title": "Plot an age pyramid.", "topics": [ "plot.pyramid" ] }, { "page": "popsample", "title": "Generic method for popsample", "topics": [ "popsample" ] }, { "page": "popsample.pyramid", "title": "Sample a population from an age pyramid (at a given time).", "topics": [ "popsample.pyramid" ] }, { "page": "popsim", "title": "Simulation of a model.", "topics": [ "popsim" ] }, { "page": "population", "title": "Class population", "topics": [ "population" ] }, { "page": "population_alive", "title": "Generic method for population_alive", "topics": [ "population_alive" ] }, { "page": "population_alive.population", "title": "Returns a population of individuals alive.", "topics": [ "population_alive.population" ] }, { "page": "print.event", "title": 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"page": "weibull", "title": "Weibull function.", "topics": [ "weibull" ] } ], "_readme": "https://github.com/daphnegiorgi/ibmpopsim/raw/HEAD/README.md", "_rundeps": [ "backports", "bit", "bit64", "checkmate", "cli", "clipr", "cpp11", "crayon", "dplyr", "farver", "generics", "ggplot2", "glue", "gtable", "hms", "isoband", "labeling", "lifecycle", "magrittr", "pillar", "pkgconfig", "prettyunits", "progress", "R6", "RColorBrewer", "Rcpp", "readr", "rlang", "S7", "scales", "tibble", "tidyselect", "tzdb", "utf8", "vctrs", "viridisLite", "vroom", "withr" ], "_sysdeps": [ { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_vignettes": [ { "source": "IBMPopSim_human_pop.Rmd", "filename": "IBMPopSim_human_pop.html", "title": "Human population", "author": "Daphné Giorgi, Sarah Kaakai, Vincent Lemaire", "engine": "knitr::rmarkdown", "headings": [ "Example description", "Population creation", "Model parameters", "Events creation", "Model creation and simulation", "Model creation", "Simulation of the population over 50 years", "Different simulations with the same model", "Change of initial population", "Modify an intensity", "Deactivate an event", "Addition of \"number of children\" characteristic", "Addition of \"cause of death\" characteristics", "Model with two independent causes of death", "Death and exposure table" ], "created": "2020-06-22 17:57:19", "modified": "2024-10-10 10:25:42", "commits": 7 }, { "source": "IBMPopSim_human_pop_IMD.Rmd", "filename": "IBMPopSim_human_pop_IMD.html", "title": "Human population with swap", "author": "Daphné Giorgi, Sarah Kaakai, Vincent Lemaire", "engine": "knitr::rmarkdown", "headings": [ "Example description", "Population creation", "Events description", "Death events", "Parameters", "Birth events", "Event creation", "Swap event", "Model creation (without id)", "Simulation", "Events 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"commits": 5 }, { "source": "IBMPopSim.Rmd", "filename": "IBMPopSim.html", "title": "IBMPopSim package description", "author": "Daphné Giorgi, Sarah Kaakai, Vincent Lemaire", "engine": "knitr::rmarkdown", "headings": [ "Brief overview of Individual-Based-Models (IBMs)", "Individuals and population", "Events type", "Intensity classes", "Simulation algorithm", "Package description", "Installation", "Population", "Events", "Intensities", "Event kernel code", "Model creation", "Simulation", "Events bounds", "Simulation", "Outputs", "Simulation with swap events", "Vector of times in ?popsim.", "Individual life courses", "References" ], "created": "2020-06-22 17:57:19", "modified": "2024-10-10 10:25:42", "commits": 6 }, { "source": "IBMPopSim_insurance_portfolio.Rmd", "filename": "IBMPopSim_insurance_portfolio.html", "title": "Insurance portfolio", "author": "Daphné Giorgi, Sarah Kaakai, Vincent Lemaire", "engine": "knitr::rmarkdown", "headings": [ "Example description", "Population 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